Category: Bioengineering

IFG26 – Statistical Physics Days

26th Statistical Physics Days were held in İzmir Institute of Technology.

During the program organization, Prof. Nejat Bulut’s dedication and careful attention to every detail was so amazing that it will be a very nice experience in my mind.

It was an honor to be among the successful physicist academicians and to listen to their work. It was also my chance that I had the opportunity to talk about my own practice and find the opportunity to discuss it with very precious professors.

K. Banu Kose

In Silico Biomechanical Analysis for Surgical Planning

Soruce: http://complexsystems.khas.edu.tr/

Starfish Medical – VivitroLabs – ProtomedLabs


Ece Tutsak (Left) – Banu Köse(Middle) – Vincent Garitey(Right)

Women in 3D Printing

I was the guest of Women in 3D Printing this week.

The full-page is on this page: https://womenin3dprinting.com/banu-kose/

Thanks to Nora Toure for all the great work she has done and for bringing us together.

Read more »

8th Euro Biotechnology Congress August 18-20, 2015 Frankfurt

Beykent University Biomedical Engineering Event

I would like to thank the students of the biomedical department of Beykent University for inviting me to their event. It was nice to meet the curious and excited students.

Beykent Üniversitesi

Liquid State Physics in Turkey

22. Liquid State Symposium (22. Sıvı Hal Senpozyumu) took place on 7th December 2018 in Piri Reis University.
It was very proud to be together with the physicist academics I knew and admired since my undergraduate years.
I find myself lucky to see the Prof. Zehra Akdeniz that I have always admired and exemplified. I could finally meet Prof. Nihat Berker who is not only a famous physicist but also an intellectual on comparative literature readings.

Thanks to Dr. Ozan Sarıyer and Dr. Gulsen Evingur for organizing this meeting.

The symposium program link

Prof Pekkan presented biological flow researches of his lab, and I presented a sample case of a pediatric aortic blood flow comparison study which is done with the great help of Dr. Ece Salihoglu.

Virtual Physiological Human Conference 2018 / Zaragoza

Conference Web Link

8th World Congress of Biomechanics / Pekkan Lab

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Optimizing your workflow in the Mimics Innovation Suite

The Mimics Innovation Suite (MIS) allows you to automate your workflows, potentially saving a lot of time, achieving more consistency, and reducing repetitive work and human error. That is an easy thing to say, but if you do not have much experience with scripting, we all know that it can be tough to get started. If you want to speed up your learning curve and get a head start, then this could be an interesting training for you.

Topics will include:

Basics of Optimizing your Workflow in Mimics 21 and 3-matic 13
How to write your first scripts
Introduction to Python
Hands-on training exercises for creating planning workflows (e.g. loading datasets, performing basic segmentation steps, landmarking, creating anatomical coordinate systems, designing custom implants)

Simscale Certification

Thanks to Anna Flessner and Milad Mafi for the certificate, excellent training documents and lectures. #Simscale

The workshop was including the simulations of

1- Hip Joint Prosthesis and comparison of different materials with displacements

2- Stent Design and Comparison of different materials and different balloon pressures

3- Comparison of different stenosis persentages in carotid artery samples by CFD

‘Lauded’


Cardiovascular

Wilhelmina Children’s Hospital / Utrecht Sessions

3 daags kindercardiologie TGA symposium

UMC Utrecht

ISCOMS 2017 at University of Groningen

Many thanks to University Medical Center Groningen for the oral sessions and workshops of 3D Lab, LVAD treatment, Dissection of Brain, CABG treatment, IV Injections and Nuclear Medicine.

Knee Anatomy – 3D Slicer

I tried to show the knee anatomy with the MRI dataset of 3D Slicer (Harvard Medical School /Brigham and Women’s Hospital / Surgical Planning Laboratory)

Mimics Innovation Course 2017

Materialise provided a Mimics Innovation Course on Soft Tissue.

This training was very informative and well-presented with all soft tissue samples, text book and datasets.

I used 3-Matic for the first time, and got confidence about many things about design and meshing. We could also discuss our own projects and could ask possible options of Mimics Innovation Suite.

Learning about the news about scripting possibilities to automate the workflow, and ADam (Materialise Anatomical Data Mining) for shape optimisation was encouraging.

Thank you for sharing your knowledge with us, Karen de Leener and Inés da Silva.

Thank you for the great help of Job der Kinderen.

Voksel 3D Surgical Planning with Simpleware

We depicted a live- surgical planning scenario with Prof. Erbil Oğuz and Kerem Girgin in Voksel 3D event. We used Simpleware for image processing, segmentation and designing.

VOKSEL 3D Event in Istanbul

Voksel’s Anatomical Modeling, Surgical Planning, 3D Printing with Engineer – Surgeon Collaboration Training‘ was held on 23rd February in Istanbul.

I had the chance to share my experiences in image processing and modeling with the participants. I would like to thank Kerem Girgin, Erbil Oğuz, Samet Serbest and Cansu Çeltik from Voksel. It was great to be a part of Voksel team, and meeting with the participants who were aware of the benefits of interdisciplinary collaborations and patient-specific planning very well.

Surgical Planning and 3D Printing Meeting

Advances in Cardiac Imaging

While cardiac magnetic resonance imaging (MRI) is considered an excellent imaging modality for the heart, offering highly detailed soft tissue anatomical imaging as well as functional assessments, it only makes up about 5 percent of all MRI scans in the United States. This is in part due to the expense, time involved and the complexity in completing these scans and reading them. There were two software innovations that may help increase the use of cardiac MRI by reducing its complexity.

To read the entire article, go to www.dicardiology.com/article/advances-cardiac-imaging-rsna-2016.

At RSNA 2015, Arterys introduced a package of advanced cardiac MRI visualization and quantification software that automates a lot of the processes involved. It also uses a cloud-based platform that allows access to a large amount of computing power needed to process cardiac cine functional data in real time. The software includes 4-D Flow and 2-D phase contrast workflows, and cardiac function measurements. The software is the first clinically available cardiovascular solution that delivers cloud-based, real-time processing of images with resolutions previously unattainable. The company gained U.S. Food and Drug Administration (FDA) 510(k) clearance in November 2016 and showed several new advancements at RSNA 2016. Arterys is partnering with GE Healthcare to introduce the software on the Signa MRI systems under the GE name of ViosWorks. However, Arterys said it has aspirations to be a software OEM for several MRI vendors. An additional introduction was Arterys? regurgitation evaluation software that offers several ways to view regurgitation, which has traditionally been difficult to assess on MRI. One view visualizes blood flow velocities with arrows to show direction of flow and a color code to show the speed of the flow. It presents very similar to cardiac ultrasound color flow Doppler. The software can help identify regurgitation jets, vortices and sheer wall stresses, and offers automated quantification. In cardiovascular research, sheer stress evaluation has become a big area of interest because it is believed these stresses may play a role in the formation of atherosclerosis, the degradation of heart valve function, and possibly play a role in the progression of heart failure. So, Arterys also introduced a research sheer stress analysis software package.

- DAVE FORNELL

To read the entire article, go to www.dicardiology.com/article/advances-cardiac-imaging-rsna-2016.

Laser Doppler Velocimetry

Laser Doppler velocimetry is used in hemodynamics research as a technique to partially quantify blood flow in human tissues such as skin. Within the clinical environment, the technology is often referred to as laser Doppler flowmetry (LDF). The beam from a low-power laser (usually a laser diode) penetrates the skin sufficiently to be scattered with a Doppler shift by the red blood cells and return to be concentrated on a detector. These measurements are useful to monitor the effect of exercise, drug treatments, environmental, or physical manipulations on targeted micro-sized vascular areas.

The laser Doppler vibrometer is being used in clinical otology for the measurement of tympanic membrane (eardrum), malleus (hammer), and prosthesis head displacement in response to sound inputs of 80- to 100-dB sound-pressure level. It also has potential use in the operating room to perform measurements of prosthesis and stapes (stirrup) displacement.