A team I am honored to be involved in EVBio!
EVBio is a digital think tank formed by scientists from all disciplines related to vascular medicine, from molecular biology to scientific computing. Our mission is to imagine the future through disruptive basic and translational research. Our team works tirelessly to formulate one universal coherent theory for vascular disease and support all global efforts towards its conception and validation.
Our mission is to create a future generation of clinician engineers.
I am very happy to be in this team and to do great work with these amazing people.
The Clinician Engineer Hub was launched in 2019 in collaboration between clinicians and engineers at the Queen Elizabeth Hospital Birmingham, Imperial College London, and King’s College London.
UK
This international hub brings together the clinical and biomedical engineering fields and provides talented medical students and clinicians exposure to the world of biomedical engineering, the challenges doctors face in diagnosing and treating patients, and how to potentially solve these issues with cutting-edge engineering solutions.
We discussed how we can reach a ‘life without barriers’ in the future and evaluated the projects that the contestant groups developed during the event day within the context of hackathon. Congratulations to the winning teams.
To commemorate International Women’s Day (8 March 2020), 3DMedNet has put together our first ‘Ask the experts’ feature in partnership with the global organization, Women in 3D Printing. Thanks to Georgi for inviting me to the conversation. Check the link for the full interview.
A joint meeting showcasing current work addressing the complex challenges in cardiac flow modeling, particularly focusing on the work of early career researchers (source).
22. Liquid State Symposium (22. Sıvı Hal Senpozyumu) took place on 7th December 2018 in Piri Reis University.
It was very proud to be together with the physicist academics I knew and admired since my undergraduate years.
I find myself lucky to see the Prof. Zehra Akdeniz that I have always admired and exemplified. I could finally meet Prof. Nihat Berker who is not only a famous physicist but also an intellectual on comparative literature readings.
Thanks to Dr. Ozan Sarıyer and Dr. Gulsen Evingur for organizing this meeting.
Prof Pekkan presented biological flow researches of his lab, and I presented a sample case of a pediatric aortic blood flow comparison study which is done with the great help of Dr. Ece Salihoglu.
The Mimics Innovation Suite (MIS) allows you to automate your workflows, potentially saving a lot of time, achieving more consistency, and reducing repetitive work and human error. That is an easy thing to say, but if you do not have much experience with scripting, we all know that it can be tough to get started. If you want to speed up your learning curve and get a head start, then this could be an interesting training for you.
Topics will include:
Basics of Optimizing your Workflow in Mimics 21 and 3-matic 13
How to write your first scripts
Introduction to Python
Hands-on training exercises for creating planning workflows (e.g. loading datasets, performing basic segmentation steps, landmarking, creating anatomical coordinate systems, designing custom implants)
I had the chance to listen to the work of the most successful pediatric cardiologists and surgeons in the field and to learn a lot about TGA.
I would like to thank Heynric Grotenhuis for the courtesy and help in the pre-seminar correspondence. And I would like to thank Gregor Krings for his support to share my work and to inspirational favour to interdisciplinary research.
I am delighted to have the chance to meet Gregor Krings, Heynric Grotenhuis,Tjark Ebels, Mario Carminati, Tara Bharucha , Petru Liuba, Virpe Puska and Ghadeera Almansoori.
Laser Doppler velocimetry is used in hemodynamics research as a technique to partially quantify blood flow in human tissues such as skin. Within the clinical environment, the technology is often referred to as laser Doppler flowmetry (LDF). The beam from a low-power laser (usually a laser diode) penetrates the skin sufficiently to be scattered with a Doppler shift by the red blood cells and return to be concentrated on a detector. These measurements are useful to monitor the effect of exercise, drug treatments, environmental, or physical manipulations on targeted micro-sized vascular areas.
The laser Doppler vibrometer is being used in clinical otology for the measurement of tympanic membrane (eardrum), malleus (hammer), and prosthesis head displacement in response to sound inputs of 80- to 100-dB sound-pressure level. It also has potential use in the operating room to perform measurements of prosthesis and stapes (stirrup) displacement.
The symposium was obtaining various studies about liquids as water and climate change, simulating strait systems, oceans, spin glass phases, liquid crystals, serum transferring, swollen gells, GO composites, metals with glass-like structure, super hidrophobic polistren and, biofluids {yes, this was mine }.
It was an incontrovertible experience for me that i could meet new studies in the field and spend nameable times with physics authors.
Many thanks to organizing comitee (especially to Gülşen Evingür) and Sevtap Yıldız Özbek.
Computational Life is a young company which has the specialty on computational flow simulations and mathematical models for the medical technology field.
The validated software Digital Avatar Platform (DAP) of Computational Life is modeling human and animal body mathematically. It is testing physiological scenarios for drugs, medical devices and treatment methods.
Circulation system, cerebrospinal fluids, transport of pharmaceutical products throughout the body can be simulated for the human and animal body with DAP. It can also be modified due to the experiment.
They replied to me with a very warm and energetic mood when I wrote them. It is great that there are enthusiastic people in the medical technology field. I am sure that I will hear more about the news of Computational Life in the next days.
Thanks to Christian Contarino, Davide Chieco and Carlo Rivis for their innovative platform which brings a great help for clinicians, researchers, and engineers.
I had chance to present my works to authors and answer the questions of young curious physicisits at GEFIK2016 in Ege University. Discussing about medical physics and classical mechanics with physicists was a peerless experience.
Many thanks to University Medical Center Groningen for the oral sessions and workshops of 3D Lab, LVAD treatment, Dissection of Brain, CABG treatment, IV Injections and Nuclear Medicine.
Materialise provided a Mimics Innovation Course on Soft Tissue.
This training was very informative and well-presented with all soft tissue samples, text book and datasets.
I used 3-Matic for the first time, and got confidence about many things about design and meshing. We could also discuss our own projects and could ask possible options of Mimics Innovation Suite.
Learning about the news about scripting possibilities to automate the workflow, and ADam (Materialise Anatomical Data Mining) for shape optimisation was encouraging.
Thank you for sharing your knowledge with us, Karen de Leener and Inés da Silva.
In multidisciplinary areas, it is very important to be able to meet with the team who can work in harmony.
For his work on 3D intracardiac models on surgical planning, Thanks to cardiovascular surgeon Dr. Okan Yildiz, we have been informed about and contributed to many pediatric cases and treatments since 2016.
On October 19 Koc University presented “The Impacts of Cardiac MRI on Congenital Heart Surgical Results,” a public symposium at Koc University Hospital Artlab Conference Hall that explored the benefits of cardiac MRI scans for depicting the congenital heart anatomy.
The symposium began with a presentation by Prof. Afksendiyos Kalangos. He was followed by renowned pediatric cardiovascular surgeons and cardiologists Prof. Atıf Akçevin, Prof. Alpay Çeliker, Prof. Aphrodite Tzifa, A. Professor Tijen Alkan- Bozkaya and the radiologists Dr. Serhat Aygün, A. Professor Özdil Başkan who presented their own experiences, demonstrating a vast range of approaches to defining the context.
Prof. Kerem Pekkan presented his studies with MRI imaging and cardiovascular mechanics in the cases of blood flow dynamics, biomaterial tests, patient-specific vascular materials and surgical planning for congenital heart diseases. His signified projects were one of the fascinating parts of the symposium for participants.
Hemodyn, the first cardiovascular mechanics and surgical planning company of Turkey is taking place in StartUp Istanbul 2015.
Hemodyn is assisting the surgeons in the diagnosis and surgery planning of the congenital heart diseases in The Incubation Office of Koc University.
Hemodyn Team has always been an invariable place for my research vision. I want to thank to Kerem Pekkan, Şenol Pişkin and Volkan Tuncay by means of this event.
We depicted a live- surgical planning scenario with Prof. Erbil Oğuz and Kerem Girgin in Voksel 3D event. We used Simpleware for image processing, segmentation and designing.
Welcoming you all to our upcoming female Clinician Engineer Hub Webinar series for this July.
‘Clinician Engineer Hub was born in a collaboration between clinicians and independent research groups at the Queen Elizabeth Hospital Birmingham, Imperial College London, and King’s College London. This international hub is a non-profit organization that aims to bring together the clinical and biomedical engineering field and provide talented medical students and clinicians exposure to the world of clinical medicine, the challenges doctors face in diagnosing and treating patients, and how to potentially solve these issues with cutting edge engineering solutions.’
‘The hub allows medical students and clinicians fascinated by pathophysiology to understand the current diagnostic and treatment gaps in the clinical field and design effective solutions based on solid engineering principles. It will be revolutionary for your career with the unique opportunity to receive mentorship across world-renowned academic centers in the UK and abroad.’
Thanks Dr. Neel Sharma for bringing such a team together!
I would like to thank the students of the biomedical department of Beykent University for inviting me to their event. It was nice to meet the curious and excited students.
‘Voksel’s Anatomical Modeling, Surgical Planning, 3D Printing with Engineer – Surgeon Collaboration Training‘ was held on 23rd February in Istanbul.
I had the chance to share my experiences in image processing and modeling with the participants. I would like to thank Kerem Girgin, Erbil Oğuz, Samet Serbest and Cansu Çeltik from Voksel. It was great to be a part of Voksel team, and meeting with the participants who were aware of the benefits of interdisciplinary collaborations and patient-specific planning very well.
Pediatric re-stenosed pulmonary artery model is depicted with marked points of unstable wall shear stress (WSS) which brings about the thinner layers by platelets. This means the loss of smooth muscle cells and remodeling risk. Sudden bends and tapering in the geometry induces high velocity gradients and high wall shear stress.
4th Istanbul Symposium of Pediatric Life Support Systems and Pediatric Cardiopulmoner Bypass:The Last Advances in 2012 hold on Istanbul Mehmet Akif Ersoy Thoracic & Cardiovascular Surgery Training and Research Hospital.
I tried to show the knee anatomy with the MRI dataset of 3D Slicer (Harvard Medical School /Brigham and Women’s Hospital / Surgical Planning Laboratory).
3D Printing, 3D Slicer, ANSYS, Art, Artificial Organs, Banu Köse, Banu Pluie, BioFluidLab, Bioengineering, Biomaterials, Biomechanics, Biomed, Biomedical Science, Biophysics, Bioprinting, Biosecience, Cardiology, Cardiovascular Implants, Cerrahi, Circulatory Support Systems, ClinicianEngineerHub, Complex Systems, Congenital, Ece Salihoglu, Engineering, Finite Element Model, Fontan, Gradute, Heart, Heart Valves, Hemodynamics, Hepatic, IMAEH, Image Processing, K. Banu Köse, Kardiyovasküler, Kardiyovasküler Mekanik, Kevser Banu Köse, Laser Doppler, Liquid State, Materialise Medical, Medipol, Medtronic, Pediatric, Perfusion, Perfüzyon, PhD, Physics, Pulmonary, Radiology, Slicer, Structural Analysis, Surgery, SurgicalPlanning, Sıvı Hal Fiziği, TGA, The Journal of Cardiovascular Surgery, VSD, VirtalSurgery, Virtual Physiological Human, Windkessel, WomenEngineers, womenin3d
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