Surgical Planning Laboratory

EVBio

A team I am honored to be involved in EVBio!
EVBio is a digital think tank formed by scientists from all disciplines related to vascular medicine, from molecular biology to scientific computing. Our mission is to imagine the future through disruptive basic and translational research. Our team works tirelessly to formulate one universal coherent theory for vascular disease and support all global efforts towards its conception and validation.

Our membership will increase soon!

Clinical Engineer Hub

Our mission is to create a future generation of clinician engineers.
I am very happy to be in this team and to do great work with these amazing people.
The Clinician Engineer Hub was launched in 2019 in collaboration between clinicians and engineers at the Queen Elizabeth Hospital Birmingham, Imperial College London, and King’s College London.

UK

This international hub brings together the clinical and biomedical engineering fields and provides talented medical students and clinicians exposure to the world of biomedical engineering, the challenges doctors face in diagnosing and treating patients, and how to potentially solve these issues with cutting-edge engineering solutions.

Web Site Link

Cardiovascular Engineering in Istanbul

We talked about cardiovascular engineering and its future.   I was honored to be a  guest in Future Research Institute. Many thnaks to Coskun Dolanbay.

Soruce

Bio Futurathon

We discussed how we can reach a ‘life without barriers’ in the future and evaluated the projects that the contestant groups developed during the event  day within the context of hackathon. Congratulations to the winning teams.

For more details : BioFuturathon and Future Research Institute

Source

Women in STEM

To commemorate International Women’s Day (8 March 2020), 3DMedNet has put together our first ‘Ask the experts’ feature in partnership with the global organization, Women in 3D Printing.  Thanks to Georgi for inviting me to the conversation. Check the link for the full interview.

Pediatric Cardiac Imaging Session

SickKids

Women in 3D Printing

I was the guest of Women in 3D Printing this week.

The full-page is on this page: https://womenin3dprinting.com/banu-kose/

Thanks to Nora Toure for all the great work she has done and for bringing us together.

Read more »

Institute of Physics / Challenges in Cardiocascular Flow

A joint meeting showcasing current work addressing the complex challenges in cardiac flow modeling, particularly focusing on the work of early career researchers (source).

Liquid State Physics in Turkey

22. Liquid State Symposium (22. Sıvı Hal Senpozyumu) took place on 7th December 2018 in Piri Reis University.
It was very proud to be together with the physicist academics I knew and admired since my undergraduate years.
I find myself lucky to see the Prof. Zehra Akdeniz that I have always admired and exemplified. I could finally meet Prof. Nihat Berker who is not only a famous physicist but also an intellectual on comparative literature readings.

Thanks to Dr. Ozan Sarıyer and Dr. Gulsen Evingur for organizing this meeting.

Prof Pekkan presented biological flow researches of his lab, and I presented a sample case of a pediatric aortic blood flow comparison study which is done with the great help of Dr. Ece Salihoglu.

Virtual Physiological Human Conference 2018 / Zaragoza

Conference Web Link

8th World Congress of Biomechanics / Pekkan Lab

More

DONE

Optimizing your workflow in the Mimics Innovation Suite

The Mimics Innovation Suite (MIS) allows you to automate your workflows, potentially saving a lot of time, achieving more consistency, and reducing repetitive work and human error. That is an easy thing to say, but if you do not have much experience with scripting, we all know that it can be tough to get started. If you want to speed up your learning curve and get a head start, then this could be an interesting training for you.

Topics will include:

Basics of Optimizing your Workflow in Mimics 21 and 3-matic 13
How to write your first scripts
Introduction to Python
Hands-on training exercises for creating planning workflows (e.g. loading datasets, performing basic segmentation steps, landmarking, creating anatomical coordinate systems, designing custom implants)

CERTIFICATED ANSYS DISCOVERY LIVE ’3D Modeling, Design & Simulation in real time’

Simscale Certification

Thanks to Anna Flessner and Milad Mafi for the certificate, excellent training documents and lectures. #Simscale

The workshop was including the simulations of

1- Hip Joint Prosthesis and comparison of different materials with displacements

2- Stent Design and Comparison of different materials and different balloon pressures

3- Comparison of different stenosis persentages in carotid artery samples by CFD

‘Lauded’

Cardiovascular

The 5th ‘The Utrecht Sessions’ for Congenital Heart Disease

The Utrecht Sessions for Congenital Heart Disease was held at the University Medical Center Utrecht on 8-10 February. It was one of the best organized meetings I’ve ever attended.

I had the chance to listen to the work of the most successful pediatric cardiologists and surgeons in the field and to learn a lot about TGA.

I would like to thank Heynric Grotenhuis for the courtesy and help in the pre-seminar correspondence. And I would like to thank Gregor Krings for his support to share my work and to inspirational favour to interdisciplinary research.

I am delighted to have the chance to meet Gregor Krings, Heynric Grotenhuis, Tjark Ebels, Mario Carminati, Tara Bharucha , Petru Liuba, Virpe Puska and Ghadeera Almansoori.

Utrecht Medical Center / TGA Symposium

HORST KIECHLE

Source

Laser Doppler Velocimetry

Laser Doppler velocimetry is used in hemodynamics research as a technique to partially quantify blood flow in human tissues such as skin. Within the clinical environment, the technology is often referred to as laser Doppler flowmetry (LDF). The beam from a low-power laser (usually a laser diode) penetrates the skin sufficiently to be scattered with a Doppler shift by the red blood cells and return to be concentrated on a detector. These measurements are useful to monitor the effect of exercise, drug treatments, environmental, or physical manipulations on targeted micro-sized vascular areas.

The laser Doppler vibrometer is being used in clinical otology for the measurement of tympanic membrane (eardrum), malleus (hammer), and prosthesis head displacement in response to sound inputs of 80- to 100-dB sound-pressure level. It also has potential use in the operating room to perform measurements of prosthesis and stapes (stirrup) displacement.

VasCollar (Vascular Collar)

I’ve just drown vessels to my collar. It looks better now.

For More  Drawords Stuff, Click Here.

İTÜ

I could have a chance to give a seminar about my research field at Istanbul Technical University.

Thanks to the faculty in The School of Physics Engineering for their sociable audience and fruitful discussions.

Special thanks to Özgür Akarsu and Sevtap Yildiz Özbek for the generous invitation and their kind hospitality.

Link

20. National Liquid State Physics Symposium 16 December 2016

20. National Symposium on  Liquid State Physics was held in Piri Reis University.

The symposium was obtaining various studies about liquids as water and climate change, simulating strait systems, oceans, spin glass phases, liquid crystals, serum transferring,  swollen gells, GO composites, metals with  glass-like structure, super hidrophobic polistren and, biofluids {yes, this was mine }.

It was an incontrovertible experience for me that i could meet new studies in the field and spend nameable times with  physics authors.

Many thanks to organizing comitee (especially to Gülşen Evingür) and Sevtap Yıldız Özbek.

The website of the symposium is here.

Windkessel plus colours ;)

I know why I’d rather CFD. Because it has colours. Windkessel analogy has not.

Link

Simulate the Physiology & Understand the Pathology

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Computational Life is a young company which has the specialty on computational flow simulations and mathematical models for the medical technology field.

The validated software Digital Avatar Platform (DAP) of Computational Life is modeling human and animal body mathematically. It is testing physiological scenarios for drugs, medical devices and treatment methods.

Circulation system, cerebrospinal fluids, transport of pharmaceutical products throughout the body can be simulated for the human and animal body with DAP. It can also be modified due to the experiment.

They replied to me with a very warm and energetic mood when I wrote them. It is great that there are enthusiastic people in the medical technology field. I am sure that I will hear more about the news of Computational Life in the next days.

Thanks to Christian Contarino, Davide Chieco and Carlo Rivis for their innovative platform which brings a great help for clinicians, researchers, and engineers.

Please check their website for more information.

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Development of Patient-specific Vascular Patches for Pediatric Cardiovascular Surgeries Using Computer-aided Design Techniques

A scene from project meeting in Koc University Hospital.

Link

Double Aortic Arch

ICPT – GEFIK 2016

I had chance to present my works to authors and answer the questions of young curious physicisits at GEFIK2016 in Ege University. Discussing about medical physics and classical mechanics with physicists was a peerless experience.

Istanbul University

How nice that the campus and its surroundings smell of history.

ISCOMS 2016

Workshop – Anatomy of Thef Heart with Michiel E. Erasmus MD PhD – Faculty of Medical Sciences- Groningen University

6ISCOMS 2017 at University of Groningen

Mimics Innovation Course 2017 – Belgium

Materialise provided a Mimics Innovation Course on Soft Tissue.

This training was very informative and well-presented with all soft tissue samples, text book and datasets.

I used 3-Matic for the first time, and got confidence about many things about design and meshing. We could also discuss our own projects and could ask possible options of Mimics Innovation Suite.

Learning about the news about scripting possibilities to automate the workflow, and ADam (Materialise Anatomical Data Mining) for shape optimisation was encouraging.

Thank you for sharing your knowledge with us, Karen de Leener and Inés da Silva.

Thank you for the great help of Job der Kinderen.

3D Intracardiac Models for Surgical Planning

In multidisciplinary areas, it is very important to be able to meet with the team who can work in harmony.

For his work on 3D intracardiac models on surgical planning,  Thanks to cardiovascular surgeon Dr. Okan Yildiz, we have been informed about and contributed to many pediatric cases and treatments since 2016.

Me in FU Fluids Lab and The Oxygenator from IMAEH (2013)

Anatomical Modeling & 3D Printing Meeting with 4C Medikal

Cardio-Pulmonary By-Pass Circuit

I simplify by drawing.

The Impacts of Cardiac MRI on Congenital Surgical Results

On October 19 Koc University presented “The Impacts of Cardiac MRI on Congenital Heart Surgical Results,” a public symposium at Koc University Hospital Artlab Conference Hall that explored the benefits of cardiac MRI scans for depicting the congenital heart anatomy.

The symposium began with a presentation by Prof. Afksendiyos Kalangos. He was followed by renowned pediatric cardiovascular surgeons and cardiologists Prof. Atıf Akçevin, Prof. Alpay Çeliker, Prof. Aphrodite Tzifa, A. Professor Tijen Alkan- Bozkaya and the radiologists Dr. Serhat Aygün, A. Professor Özdil Başkan who presented their own experiences, demonstrating a vast range of approaches to defining the context.

Prof. Kerem Pekkan presented his studies with MRI imaging and cardiovascular mechanics in the cases of blood flow dynamics, biomaterial tests, patient-specific vascular materials and surgical planning for congenital heart diseases. His signified projects were one of the fascinating parts of the symposium for participants.

Hemodyn

Hemodyn, the first cardiovascular mechanics and surgical planning company of Turkey is taking place in StartUp Istanbul 2015.

Hemodyn is assisting the surgeons in the diagnosis and surgery planning of the congenital heart diseases in The Incubation Office of Koc University.

Hemodyn Team has always been an invariable place for my research vision. I want to thank to Kerem Pekkan, Şenol Pişkin and Volkan Tuncay by means of this event.

Link

Aorta

Instagram

Omics Conference

Minerva Medica

VOKSEL 3D TRAINING

Talking about cardiac  imaging with Dr. Taliha Öner has always been a pleasure.

Good Luck in Boston.

LAB SCENES

Voksel 3D Surgical Planning with Simpleware -İstanbul

We depicted a live- surgical planning scenario with Prof. Erbil Oğuz and Kerem Girgin in Voksel 3D event. We used Simpleware for image processing, segmentation and designing.

The Office

ECVS Conference

It was  sensible showing 3D printed models when i was presenting my study.

The Good Old Days in IU

MY TINY DIY HEART

Back to childhood:  I spend my time with play-dough

Link

Velocity Contours in Iso-Surfaces for The Re-Stenosed Pulmonary Artery

The entrance lenght parts of the inlet and outlet sections are only used for calculation process.

Thesis

Prof. Khosrow Mottaghy commented on my study <3

Link

A 3D Patient-Specific Aorta Model which is Segmented by The Visualisation Toolkit

Starfish Medical – VivitroLabs – ProtomedLabs – Marseille – France

Ece Tutsak (Left) – Banu Köse(Middle) – Vincent Garitey(Right)

Wilhelmina Children’s Hospital / Utrecht Sessions – The Netherlands

3 daags kindercardiologie TGA symposium

UMC Utrecht

Female ‘Clinician Engineer Hub’ Webinar Series

Welcoming you all to our upcoming female Clinician Engineer Hub Webinar series for this July.

‘Clinician Engineer Hub was born in a collaboration between clinicians and independent research groups at the Queen Elizabeth Hospital Birmingham, Imperial College London, and King’s College London. This international hub is a non-profit organization that aims to bring together the clinical and biomedical engineering field and provide talented medical students and clinicians exposure to the world of clinical medicine, the challenges doctors face in diagnosing and treating patients, and how to potentially solve these issues with cutting edge engineering solutions.’

‘The hub allows medical students and clinicians fascinated by pathophysiology to understand the current diagnostic and treatment gaps in the clinical field and design effective solutions based on solid engineering principles. It will be revolutionary for your career with the unique opportunity to receive mentorship across world-renowned academic centers in the UK and abroad.’

Thanks Dr. Neel Sharma  for bringing such a team together!

[ Call: http://www.cardiovascularmechanics.org/wp-content/uploads/2020/05/Clinician-Engineer-Hub-on-Twitter-Our-host-@poiseuilleplu-li1.mp4 ]

[ on Twitter:  https://twitter.com/clinicengine , on Web : https://clinicianengineer.com/ ]

Clinical Engineering Lecture in Beykent University

Lecture

Beykent University Biomedical Engineering Event

I would like to thank the students of the biomedical department of Beykent University for inviting me to their event. It was nice to meet the curious and excited students.

VOKSEL 3D Event in Istanbul

‘Voksel’s Anatomical Modeling, Surgical Planning, 3D Printing with Engineer – Surgeon Collaboration Training‘ was held on 23rd February in Istanbul.

I had the chance to share my experiences in image processing and modeling with the participants. I would like to thank Kerem Girgin, Erbil Oğuz, Samet Serbest and Cansu Çeltik from Voksel. It was great to be a part of Voksel team, and meeting with the participants who were aware of the benefits of interdisciplinary collaborations and patient-specific planning very well.

Wall Shear Stress

Pediatric re-stenosed pulmonary artery model is depicted with marked points of unstable wall shear stress (WSS) which brings about the thinner layers by platelets. This means the loss of smooth muscle cells and remodeling risk. Sudden bends and tapering in the geometry induces high velocity gradients and high wall shear stress.

Blood Flow Analysis Through Pulmonary Artery

7th Istanbul Symposium of International Society for Pediatric Mechanical Cardiopulmonary Support

4th Istanbul Symposium of Pediatric Life Support Systems and Pediatric Cardiopulmoner Bypass:The Last Advances in 2012

4th Istanbul Symposium of Pediatric Life Support Systems and Pediatric Cardiopulmoner Bypass:The Last Advances in 2012 hold on Istanbul Mehmet Akif Ersoy Thoracic & Cardiovascular Surgery Training and Research Hospital.

4th Istanbul Symposium: Pediatric Support Systems and Pediatric Cardiopulmonary Bypass

The 4th Pediatric Support Systems and Pediatric Cardiopulmonary

Bypass Symposium will be held on 28th July 2012

at Istanbul Mehmet Akif Ersoy

Thoracic & Cardiovascular Surgery Training and Research Hospital.

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Cardiopulmonary Perfusion 8th International Conference on Pediatric Mechanical Circulatory Support Systems & Pediatric Cardiopulmonary Perfusion

Cardiopulmonary Perfusion 8th International Conference on Pediatric Mechanical Circulatory Support Systems & Pediatric Cardiopulmonary Perfusion will be held JUNE 13-16, 2012, GALATASARAY UNIVERSITY, ISTANBUL, TURKEY

Frankfurt Euro Biotechnology Congress

Knee Anatomy Segmentation

I tried to show the knee anatomy with the MRI dataset of 3D Slicer (Harvard Medical School /Brigham and Women’s Hospital / Surgical Planning Laboratory).

Video: Knee Anatomy